5GVD
Human TDRD3 DUF1767-OB domains
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2015-01-30 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 65 |
Unit cell lengths | 85.669, 85.669, 104.207 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.834 - 1.623 |
R-factor | 0.1758 |
Rwork | 0.175 |
R-free | 0.19890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nbi |
RMSD bond length | 0.018 |
RMSD bond angle | 1.607 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.650 |
High resolution limit [Å] | 1.620 | 1.620 |
Number of reflections | 54685 | |
<I/σ(I)> | 43.9 | |
Completeness [%] | 100.0 | |
Redundancy | 20.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293 | 1.26 M NaH2PO4 and 0.14 M K2HPO4 (pH 5.6) |