Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5GHU

Crystal structure of YadV chaperone at 1.63 Angstrom

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2011-09-25
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5417
Spacegroup nameC 2 2 21
Unit cell lengths100.280, 127.560, 45.840
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution22.009 - 1.630
R-factor0.1686
Rwork0.168
R-free0.18630
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3me0 1klf 3f65
RMSD bond length0.016
RMSD bond angle1.590
Data scaling softwareSCALA (3.3.21)
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]78.83820.8421.720
High resolution limit [Å]1.6305.1501.630
Rmerge0.0280.511
Rmeas0.0640.0310.552
Rpim0.0170.0080.154
Total number of observations4858001705364105
Number of reflections36961
<I/σ(I)>21.644.24.4
Completeness [%]99.598.598.7
Redundancy13.113.412.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.62770.1 M ammonium sulfate, 0.1 M sodium acetate, 0.3 M sodium formate, 30% PEG 400

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon