5FYR
Calcium-dependent phosphoinositol-specific phospholipase C from a Gram-negative bacterium, Pseudomonas sp, apo form, myoinositol complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-07 |
Detector | DECTRIS PILATUS3 6M |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 135.443, 135.443, 113.732 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.930 - 1.450 |
R-factor | 0.14722 |
Rwork | 0.145 |
R-free | 0.19184 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fyp |
RMSD bond length | 0.016 |
RMSD bond angle | 1.666 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.930 | 1.470 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.070 | 0.600 |
Number of reflections | 184175 | |
<I/σ(I)> | 14.5 | 2.5 |
Completeness [%] | 99.7 | 95.2 |
Redundancy | 7.2 | 5.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 10 | PEG3350 24-27%, CAPS/BICINE MIX PH 9.0-10 GRID, BEST CRYSTALS CLOSER TO PH 10, SEEDING FROM PACT H4 (0.2M KSCN, 20% PEG3350, BIS TRIS PROPANE PH 8.5), ORYX ROBOT, 24 WELL PLATE, HANGING DROPS |