Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5FYR

Calcium-dependent phosphoinositol-specific phospholipase C from a Gram-negative bacterium, Pseudomonas sp, apo form, myoinositol complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2015-05-07
DetectorDECTRIS PILATUS3 6M
Spacegroup nameP 43 21 2
Unit cell lengths135.443, 135.443, 113.732
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.930 - 1.450
R-factor0.14722
Rwork0.145
R-free0.19184
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5fyp
RMSD bond length0.016
RMSD bond angle1.666
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.9301.470
High resolution limit [Å]1.4501.450
Rmerge0.0700.600
Number of reflections184175
<I/σ(I)>14.52.5
Completeness [%]99.795.2
Redundancy7.25.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP10PEG3350 24-27%, CAPS/BICINE MIX PH 9.0-10 GRID, BEST CRYSTALS CLOSER TO PH 10, SEEDING FROM PACT H4 (0.2M KSCN, 20% PEG3350, BIS TRIS PROPANE PH 8.5), ORYX ROBOT, 24 WELL PLATE, HANGING DROPS

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon