5FA1
The structure of the beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase domain of WbbB
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-07-10 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97949 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 92.750, 159.390, 120.040 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.046 - 2.100 |
R-factor | 0.173 |
Rwork | 0.171 |
R-free | 0.20990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fa0 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.827 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.150 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.640 | |
Number of reflections | 52154 | |
<I/σ(I)> | 13.3 | 2.85 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.2 | 7.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 10 mg/ml WbbB, 0.2 M NaCl, 0.1M Bis-Tris, 25% PEG 3350, 1 mM TCEP, 1mM CMP |