5FA0
The structure of the beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase domain from WbbB
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08B1-1 |
Synchrotron site | CLSI |
Beamline | 08B1-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-07 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97836 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 82.930, 82.930, 120.710 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.465 - 2.300 |
R-factor | 0.1868 |
Rwork | 0.185 |
R-free | 0.22850 |
Structure solution method | SAD |
RMSD bond length | 0.003 |
RMSD bond angle | 0.636 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.360 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.930 | |
Number of reflections | 71295 | |
<I/σ(I)> | 19.1 | 2.2 |
Completeness [%] | 99.8 | 100 |
Redundancy | 5.8 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 10 mg/ml WbbB, 0.2M MgCl2, 0.1 M Tris.HCl, 25 % PEG 4000, 10 mM tris(2-carboxyethyl)phosphine |