5F4V
Crystal structure of the human sperm Izumo1 residues 22-268
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-04-30 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97949 |
Spacegroup name | H 3 |
Unit cell lengths | 121.300, 121.300, 53.400 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.603 - 2.900 |
R-factor | 0.1907 |
Rwork | 0.188 |
R-free | 0.23180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5f4e |
RMSD bond length | 0.012 |
RMSD bond angle | 1.270 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.8) |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.603 | 47.600 | 3.080 |
High resolution limit [Å] | 2.900 | 8.700 | 2.900 |
Rmerge | 0.120 | 0.041 | 0.526 |
Rpim | 0.055 | 0.019 | 0.239 |
Total number of observations | 37350 | 1351 | 5979 |
Number of reflections | 6484 | ||
<I/σ(I)> | 12.9 | 33.2 | 3.7 |
Completeness [%] | 100.0 | 99.4 | 100 |
Redundancy | 5.8 | 5.7 | 5.8 |
CC(1/2) | 0.996 | 0.998 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 295 | 0.085 M HEPES sodium salt (pH 7.5), 8.5% (v/v) isopropanol, 17% (w/v) PEG 4000 and 15% (v/v) glycerol |