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5F23

Crystal structure of NH(3)-dependent NAD(+) synthetase Pseudomonas aeruginosa in complex with NAD

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2015-10-20
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameC 1 2 1
Unit cell lengths111.870, 41.190, 64.130
Unit cell angles90.00, 113.54, 90.00
Refinement procedure
Resolution49.712 - 1.500
R-factor0.1404
Rwork0.138
R-free0.17990
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xfd apo structure
RMSD bond length0.007
RMSD bond angle0.899
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX ((dev_2236))
Refinement softwarePHENIX ((dev_2236))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.0001.540
High resolution limit [Å]1.5006.7101.500
Rmerge0.0390.0320.349
Rmeas0.0400.0330.386
Total number of observations432740
Number of reflections426215272952
<I/σ(I)>31.81104.34.44
Completeness [%]98.599.192.2
Redundancy10.15.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5290Morpheus screen, e1: 10% w/v PEG 20 000, 20% v/v PEG MME 550; 30mM of each diethyleneglycol, triethyleneglycol, tetraethyleneglycol, pentaethyleneglycol; 0.1 M MES/imidazole pH 6.5; PsaeA.00025.a.B1.PW37555 at 23.5 mg/ml; 5 h soak with 5mM NAD; cryo: direct; tray 258195e1, puck hml20-1

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PDB entries from 2024-05-15

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