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5EZW

Thiosulfate bound rat cysteine dioxygenase Y157H variant

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]93
Detector technologyIMAGE PLATE
Collection date2014-10-29
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5418
Spacegroup nameP 43 21 2
Unit cell lengths57.750, 57.750, 122.420
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution26.115 - 1.650
R-factor0.1726
Rwork0.172
R-free0.19220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4kwj
RMSD bond length0.009
RMSD bond angle0.858
Data reduction softwareMOSFLM
Data scaling softwareAimless (0.3.11)
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX (1.10-2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]26.12026.1201.680
High resolution limit [Å]1.6508.8901.650
Rmerge0.0730.0390.823
Rpim0.0150.0080.247
Total number of observations59222242449950
Number of reflections24590
<I/σ(I)>29.760.32.4
Completeness [%]95.796.968.3
Redundancy24.119.811.7
CC(1/2)1.0000.9990.815
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.2291Hanging drops of 3 microL of approximately 25 mg/mL Y157H-CDO (20mM Tris-HCl, pH 8.0) and 1 microL reservoir buffer containing seeds from WT-CDO were allowed to equilibrate above the reservoir buffer (26% (w/v) polyethylene glycol 4000, 200 mM ammonium acetate, 100 mM sodium citrate).

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PDB entries from 2024-05-15

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