5EZW
Thiosulfate bound rat cysteine dioxygenase Y157H variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | IMAGE PLATE |
Collection date | 2014-10-29 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 57.750, 57.750, 122.420 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.115 - 1.650 |
R-factor | 0.1726 |
Rwork | 0.172 |
R-free | 0.19220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kwj |
RMSD bond length | 0.009 |
RMSD bond angle | 0.858 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.10-2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 26.120 | 26.120 | 1.680 |
High resolution limit [Å] | 1.650 | 8.890 | 1.650 |
Rmerge | 0.073 | 0.039 | 0.823 |
Rpim | 0.015 | 0.008 | 0.247 |
Total number of observations | 592222 | 4244 | 9950 |
Number of reflections | 24590 | ||
<I/σ(I)> | 29.7 | 60.3 | 2.4 |
Completeness [%] | 95.7 | 96.9 | 68.3 |
Redundancy | 24.1 | 19.8 | 11.7 |
CC(1/2) | 1.000 | 0.999 | 0.815 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 291 | Hanging drops of 3 microL of approximately 25 mg/mL Y157H-CDO (20mM Tris-HCl, pH 8.0) and 1 microL reservoir buffer containing seeds from WT-CDO were allowed to equilibrate above the reservoir buffer (26% (w/v) polyethylene glycol 4000, 200 mM ammonium acetate, 100 mM sodium citrate). |