5EXQ
Human cytochrome c Y48H
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2015-11-05 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.95370 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 56.791, 35.965, 59.937 |
Unit cell angles | 90.00, 115.63, 90.00 |
Refinement procedure
Resolution | 54.038 - 1.600 |
R-factor | 0.1737 |
Rwork | 0.173 |
R-free | 0.19270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3zcf |
RMSD bond length | 0.011 |
RMSD bond angle | 0.950 |
Data reduction software | MOSFLM (7.1.1) |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.10-2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.040 | 54.040 | 1.620 |
High resolution limit [Å] | 1.600 | 8.600 | 1.600 |
Rmerge | 0.104 | 0.065 | 0.425 |
Rpim | 0.052 | 0.030 | 0.322 |
Total number of observations | 97684 | 979 | 3523 |
Number of reflections | 26388 | ||
<I/σ(I)> | 10.4 | 22.3 | 2.6 |
Completeness [%] | 90.1 | 92.5 | 90.6 |
Redundancy | 3.7 | 5.1 | 2.6 |
CC(1/2) | 0.991 | 0.992 | 0.678 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | Hanging drops of 1 microL of 29.5 mg/mL of reduced protein and 2 microL reservoir buffer were allowed to equilibrate above the reservoir buffer (32% (w/v) polyethylene glycol 5000, 50 mM lithiumsulfate, 50 mM Tris-HCl pH 8.5). The protein solution was 17.5 mM sodium phosphate, 25 mM sodium chloride, 15 mM sodium dithionite (pH 7.6). |