5EXJ
Crystal structure of M. tuberculosis lipoyl synthase at 1.64 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-08-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.568, 58.517, 98.772 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.345 - 1.640 |
R-factor | 0.1628 |
Rwork | 0.161 |
R-free | 0.19730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5exi |
RMSD bond length | 0.010 |
RMSD bond angle | 1.253 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.3) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 100.000 | 1.670 |
High resolution limit [Å] | 1.640 | 4.450 | 1.640 |
Rmerge | 0.098 | 0.056 | 0.609 |
Rmeas | 0.105 | 0.060 | 0.664 |
Rpim | 0.037 | 0.021 | 0.260 |
Total number of observations | 270682 | ||
Number of reflections | 35999 | ||
<I/σ(I)> | 5.4 | ||
Completeness [%] | 99.8 | 98.9 | 99.7 |
Redundancy | 7.5 | 7.4 | 6.2 |
CC(1/2) | 0.997 | 0.781 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.8 | 298 | 0.02 M citric acid, 0.08 M Bis-Tris propane, pH 8.8, 16% (w/v) PEG 3350 in drop; 0.5 M LiCl in reservoir |