5ERY
Crystal Structure of APO MenD from M. tuberculosis - P212121
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2012-05-02 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9794 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 99.405, 137.283, 164.925 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.703 - 2.250 |
R-factor | 0.2136 |
Rwork | 0.212 |
R-free | 0.24650 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.960 |
Data scaling software | Aimless (0.1.27) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 164.930 | 164.930 | 2.290 |
High resolution limit [Å] | 2.250 | 12.320 | 2.250 |
Rmerge | 0.091 | 0.035 | 1.494 |
Rpim | 0.036 | 0.015 | 0.584 |
Total number of observations | 798333 | 4591 | 39553 |
Number of reflections | 107547 | ||
<I/σ(I)> | 14.9 | 41.7 | 1.5 |
Completeness [%] | 100.0 | 98.1 | 100 |
Redundancy | 7.4 | 6.1 | 7.5 |
CC(1/2) | 0.999 | 0.998 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 8% PEG 6000, 0.1 M HEPES pH 7.5, and 3% 1,6-diaminohexane |