5ENC
Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with N-(2,6-Dichlorobenzyl)acetamide (SGC - Diamond I04-1 fragment screening)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-10-17 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.92001 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 60.687, 91.582, 24.033 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.800 - 1.590 |
R-factor | 0.2057 |
Rwork | 0.203 |
R-free | 0.24660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mb3 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.662 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.800 | 28.800 | 1.630 |
High resolution limit [Å] | 1.590 | 7.110 | 1.590 |
Rmerge | 0.041 | 0.036 | 0.726 |
Rpim | 0.018 | 0.017 | 0.314 |
Total number of observations | 120066 | 1441 | 8339 |
Number of reflections | 18820 | ||
<I/σ(I)> | 21.8 | 53.1 | 2.4 |
Completeness [%] | 99.8 | 98.2 | 98.7 |
Redundancy | 6.4 | 5.5 | 6.2 |
CC(1/2) | 0.999 | 0.999 | 0.791 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M HEPES pH 7.5 , 0.15M magnesium chloride , 32% PEG3350 |