5EMO
Structure of the star domain of T-STAR in complex with AUUAAA RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97934 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.601, 79.967, 53.831 |
Unit cell angles | 90.00, 101.05, 90.00 |
Refinement procedure
Resolution | 28.508 - 3.030 |
R-factor | 0.2256 |
Rwork | 0.221 |
R-free | 0.26890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5el3 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.669 |
Data reduction software | xia2 |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.510 | 28.510 | 3.110 |
High resolution limit [Å] | 3.030 | 13.540 | 3.030 |
Rmerge | 0.114 | 0.028 | 0.482 |
Rpim | 0.081 | 0.021 | 0.343 |
Total number of observations | 20367 | 196 | 1395 |
Number of reflections | 7908 | ||
<I/σ(I)> | 8.1 | 33.6 | 1.9 |
Completeness [%] | 94.8 | 78.5 | 90.3 |
Redundancy | 2.6 | 2.8 | 2.6 |
CC(1/2) | 0.988 | 0.997 | 0.804 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | NaCl, Na-HEPES, PEG 4000 |