5EKP
Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB (WT)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X4C |
Synchrotron site | NSLS |
Beamline | X4C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-03-05 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 157.331, 137.518, 101.448 |
Unit cell angles | 90.00, 98.50, 90.00 |
Refinement procedure
Resolution | 19.988 - 3.194 |
R-factor | 0.2501 |
Rwork | 0.248 |
R-free | 0.29100 |
RMSD bond length | 0.010 |
RMSD bond angle | 0.517 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.5.17) |
Refinement software | PHENIX (dev_2210) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.988 | 48.320 | 3.240 |
High resolution limit [Å] | 3.100 | 10.750 | 3.100 |
Rmerge | 0.052 | 0.031 | 1.246 |
Rpim | 0.040 | 0.026 | 0.935 |
Total number of observations | 97120 | 2142 | 11763 |
Number of reflections | 36869 | ||
<I/σ(I)> | 12.8 | 51.2 | 0.8 |
Completeness [%] | 96.9 | 91.2 | 96.9 |
Redundancy | 2.6 | 2.5 | 2.6 |
CC(1/2) | 0.997 | 0.994 | 0.416 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 295 | 16-18% PEG600 (v/v), 0.12 M Tris/HCl, pH 9.0, 0.1 M NaCl and 1 mM TCEP |