5EJE
Crystal structure of E. coli Adenylate kinase G56C/T163C double mutant in complex with Ap5a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-2 |
Synchrotron site | MAX II |
Beamline | I911-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-09-19 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.038 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 73.003, 79.064, 81.834 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.800 - 1.900 |
R-factor | 0.1889 |
Rwork | 0.186 |
R-free | 0.23580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ake |
RMSD bond length | 0.003 |
RMSD bond angle | 0.756 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2140: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.800 | 1.970 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.120 | 1.990 |
Number of reflections | 37833 | |
<I/σ(I)> | 18.8 | 1.8 |
Completeness [%] | 99.6 | 97.5 |
Redundancy | 14.6 | 14.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.8 | 291 | Purified AdK in 50 mM NaCl and 30 mM MES buffer, pH 6.0 was concentrated to 13 mg/ml and co-crystallized with a 5 molar excess of Ap5a. A typical drop contained 1 microL of protein mixed with 1 microL of precipitant and equilibrated against 1 mL reservoir solution containing 26-28% PEG 8K, 10 mM CoCl2 and 0.1 M NaOAc, pH 5.8). |