5E7M
Crystal structure of the active catalytic core of the human DEAD-box protein DDX3 bound to AMPPNP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-02-03 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.115869 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.930, 100.280, 107.260 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.497 - 2.304 |
R-factor | 0.2276 |
Rwork | 0.225 |
R-free | 0.28400 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.402 |
Data reduction software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.500 | 2.386 | |
High resolution limit [Å] | 2.304 | 10.290 | 2.304 |
Rmerge | 0.127 | 0.030 | 14.820 |
Rmeas | 0.135 | 0.033 | 27.419 |
Total number of observations | 198462 | ||
Number of reflections | 25668 | 313 | 1867 |
<I/σ(I)> | 10.8 | 39.99 | 0.13 |
Completeness [%] | 97.2 | 88.4 | 74.66 |
Redundancy | 7.5 | 7.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 291 | PEG-3000, sodium citrate |