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5E4M

Hydroxynitrile lyase from the fern Davallia tyermanii in complex with p-hydroxybenzaldehyde

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM14
Synchrotron siteESRF
BeamlineBM14
Temperature [K]100
Detector technologyCCD
Collection date2014-06-22
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.9184
Spacegroup nameI 2 2 2
Unit cell lengths73.513, 93.470, 117.854
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.757 - 1.801
R-factor0.1667
Rwork0.165
R-free0.19850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5e46
RMSD bond length0.007
RMSD bond angle1.002
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]36.8001.860
High resolution limit [Å]1.8001.800
Rmerge0.1080.782
Number of reflections37654
<I/σ(I)>16.661.84
Completeness [%]99.395.25
Redundancy75.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP298Native crystals of DtHNL1 were obtained by mixing 0.5ul 4 mg/mL protein sample (in 10 mM Tris-HCl pH 8.0) with 1 ul reservoir solution (0.9 M NaNO3; Na2HPO4; (NH4)2SO4 mix, 0.1 M Tris-Bicine Buffer pH 8.5 and 30% (w/v) polyethylene glycol monomethyl ether 550 & polyethylene glycol 20k; Morpheus condition C9). Additionally, native crystals were also grown by mixing 1 ul 4 mg/mL protein sample (in 10 mM Tris-HCl pH 8.0) with 0.5ul reservoir solution (0.1 M 2-(4-(2-hydroxyethyl)-1-piperazinyl) ethanesulfonic acid pH 7.5 and 10% (w/v) polyethylene glycol; JSCG condition B4).

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