Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5E3D

Crystal structure of the human BRPF1 bromodomain in complex with SEED7

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2015-07-05
DetectorPSI PILATUS 6M
Wavelength(s)0.99987
Spacegroup nameP 32 2 1
Unit cell lengths60.730, 60.730, 62.430
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution40.223 - 1.710
R-factor0.1943
Rwork0.193
R-free0.22220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4lc2
RMSD bond length0.007
RMSD bond angle0.710
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.2201.800
High resolution limit [Å]1.7101.710
Rmerge0.0310.405
Number of reflections14799
<I/σ(I)>30.35.1
Completeness [%]99.799.1
Redundancy9.59.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.52770.1 M Sodium Acetate, pH5.5, 0.15 M Sodium Nitrate, 20% PEG3350

229681

PDB entries from 2025-01-08

PDB statisticsPDBj update infoContact PDBjnumon