5DZO
Crystal structure of human T-cell immunoglobulin and mucin domain protein 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-10-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 50.739, 50.739, 84.162 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.004 - 1.301 |
R-factor | 0.1574 |
Rwork | 0.157 |
R-free | 0.17610 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.411 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.350 |
High resolution limit [Å] | 1.300 | 2.800 | 1.300 |
Rmerge | 0.069 | 0.068 | 0.173 |
Total number of observations | 328083 | ||
Number of reflections | 27042 | ||
<I/σ(I)> | 10.4 | ||
Completeness [%] | 97.4 | 99.5 | 81.8 |
Redundancy | 12.1 | 12 | 8.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 289 | 1.5 M sodium nitrate, 0.1 M sodium acetate trihydrate, pH 4.6 |