5DYX
Crystal Structure of BAZ2B bromodomain in complex with fragment F59
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 81.129, 96.236, 57.783 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.280 - 1.850 |
R-factor | 0.1774 |
Rwork | 0.176 |
R-free | 0.20170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ir5 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.000 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.120 | 48.120 | 1.890 |
High resolution limit [Å] | 1.850 | 9.060 | 1.850 |
Rmerge | 0.083 | 0.082 | 0.733 |
Rpim | 0.035 | 0.035 | 0.312 |
Total number of observations | 126337 | 1151 | 7319 |
Number of reflections | 19634 | ||
<I/σ(I)> | 11.8 | 22.8 | 2.2 |
Completeness [%] | 99.8 | 99.2 | 99.6 |
Redundancy | 6.4 | 5.7 | 6.3 |
CC(1/2) | 0.997 | 0.994 | 0.865 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | PEG500MME (20%), PEG1000 (2%), PEG3350 (2%), PEG20000 (10%), MPD (2%) |