5DYU
Crystal Structure of BAZ2B bromodomain in complex with fragment F39
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 80.792, 96.147, 57.768 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.070 - 1.650 |
R-factor | 0.1773 |
Rwork | 0.176 |
R-free | 0.19690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ir5 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.052 |
Data reduction software | XDS (0.3.11) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.070 | 48.070 | 1.680 |
High resolution limit [Å] | 1.650 | 9.040 | 1.650 |
Rmerge | 0.054 | 0.037 | 0.621 |
Rpim | 0.023 | 0.016 | 0.255 |
Total number of observations | 179350 | 1168 | 8708 |
Number of reflections | 27388 | ||
<I/σ(I)> | 15.4 | 36.8 | 2.4 |
Completeness [%] | 99.9 | 99.2 | 100 |
Redundancy | 6.5 | 5.8 | 6.6 |
CC(1/2) | 0.998 | 0.998 | 0.923 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | PEG500MME (20%), PEG1000 (2%), PEG3350 (2%), PEG20000 (10%), MPD (2%) |