5DXD
Crystal structure of Putative beta-glucanase (Rv0315 ortholog) from Mycobacterium abscessus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-08-06 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 43 |
Unit cell lengths | 52.390, 52.390, 223.350 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.430 - 1.700 |
R-factor | 0.1527 |
Rwork | 0.149 |
R-free | 0.18940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4pq9 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.940 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2165) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.740 |
High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
Rmerge | 0.066 | 0.055 | 0.524 |
Rmeas | 0.091 | 0.058 | 0.650 |
Total number of observations | 278726 | ||
Number of reflections | 65575 | 513 | 2574 |
<I/σ(I)> | 15.88 | 36.81 | 2.04 |
Completeness [%] | 99.6 | 98.7 | 97.8 |
Redundancy | 4.25 | 2.59 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 290 | Rigaku Reagents screen JCSG+ A2: 20% PEG 3350, 100mM Na3citrate/citric acid pH 5.5; MyabA.18623.a.B2.PS02117 at 17.1 mg/mg; cryo: 20% EG; tray 257193 a3; puck rdn7-6 |