5DWC
Crystal structure of restriction endonuclease AgeI
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-28 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9100 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.213, 59.269, 120.915 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.329 - 2.500 |
R-factor | 0.2186 |
Rwork | 0.214 |
R-free | 0.25600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dwb |
RMSD bond length | 0.002 |
RMSD bond angle | 0.676 |
Data reduction software | MOSFLM (7.0.6) |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP (6.0) |
Refinement software | PHENIX (1.8.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.329 | 33.329 | 2.640 |
High resolution limit [Å] | 2.500 | 7.910 | 2.500 |
Rmerge | 0.029 | 0.647 | |
Rmeas | 0.141 | ||
Rpim | 0.057 | 0.015 | 0.312 |
Total number of observations | 56770 | 1751 | 8126 |
Number of reflections | 9795 | ||
<I/σ(I)> | 12.5 | 29.4 | 3 |
Completeness [%] | 100.0 | 98.8 | 100 |
Redundancy | 5.8 | 4.8 | 5.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | Crystallization buffer was 0.1 M NaCl, 0.1 M Na-Hepes (pH 7.5), 22% PEG3350 |