Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DML

Crystal Structure of the Homocysteine Methyltransferase MmuM from Escherichia coli, Oxidized form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2015-06-18
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.9787
Spacegroup nameI 2 2 2
Unit cell lengths78.453, 84.463, 85.821
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.386 - 2.452
R-factor0.2025
Rwork0.202
R-free0.21700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1q7m
RMSD bond length0.009
RMSD bond angle1.262
Data reduction softwareXDS (OSX10.9.5_Darwin13.4.0)
Data scaling softwareAimless (0.5.8)
Phasing softwareMOLREP (2.12)
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.3902.540
High resolution limit [Å]2.4522.452
Rmerge0.0960.597
Number of reflections10744
<I/σ(I)>18.193.69
Completeness [%]99.897.69
Redundancy8.18
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.82931.6 M ammonium sulphate, 10% v/v glycerol and 0.1 M sodium acetate pH 4.8

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon