5DIB
2.25 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) Y450L point mutant from Staphylococcus aureus in complex with NAD+ and BME-modified Cys289
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-29 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 224.866, 102.633, 118.243 |
Unit cell angles | 90.00, 104.83, 90.00 |
Refinement procedure
Resolution | 29.720 - 2.250 |
R-factor | 0.21757 |
Rwork | 0.216 |
R-free | 0.25532 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mpb |
RMSD bond length | 0.011 |
RMSD bond angle | 1.769 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.720 | 2.290 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.142 | 0.649 |
Number of reflections | 122946 | |
<I/σ(I)> | 9.4 | 2.05 |
Completeness [%] | 99.6 | 99.8 |
Redundancy | 3.7 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | Protein: BetB23 (Y450L mutant), 7 mg/ml in 10 mM Tris-HCl pH 8.3 500 mM NaCl 5 mM BME 5 mM NAD (co-crystallized) Crystallization: on 11/19/2014; The Classics II Suite (D3): 0.1 M HEPES pH 7.0 30% (v/v) Jeffamine ED-2001; soaked in crystallization conditions for cryo protection. |