Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DBV

Structure of a C269A mutant of propionaldehyde dehydrogenase from the Clostridium phytofermentans fucose utilisation bacterial microcompartment

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2015-04-20
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9795
Spacegroup nameI 41 2 2
Unit cell lengths138.264, 138.264, 84.445
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.890 - 1.770
R-factor0.1484
Rwork0.146
R-free0.18300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4c3s
RMSD bond length0.010
RMSD bond angle1.263
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.8901.800
High resolution limit [Å]1.7701.770
Rmerge0.0731.050
Number of reflections40079
<I/σ(I)>22.42.3
Completeness [%]99.998.5
Redundancy12.911.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.5298PROTEIN IN 50 MM TRIS.HCL, PH 8.0, 35 MM NACL. 1:1 HANGING DROPS OVER: 0.1 M SODIUM ACETATE, PH 4.5 - 4.8 1.4 - 1.8 M AMMONIUM SULPHATE. Crystals soaked with 10 mM CoA in well solution.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon