5D7L
Structure of human MR1-5-OP-RU in complex with human MAV36 TCR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.954 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 89.280, 222.432, 98.979 |
Unit cell angles | 90.00, 100.15, 90.00 |
Refinement procedure
Resolution | 48.715 - 3.400 |
R-factor | 0.2831 |
Rwork | 0.280 |
R-free | 0.33690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4l4t |
RMSD bond length | 0.005 |
RMSD bond angle | 0.852 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.5.7) |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 89.240 | 89.240 | 3.630 |
High resolution limit [Å] | 3.400 | 9.610 | 3.400 |
Rmerge | 0.215 | 0.063 | 0.711 |
Rpim | 0.149 | 0.043 | 0.493 |
Total number of observations | 72832 | 3469 | 13329 |
Number of reflections | 25456 | ||
<I/σ(I)> | 14 | 58.5 | 3.4 |
Completeness [%] | 97.4 | 96.6 | 97.4 |
Redundancy | 2.9 | 3 | 2.9 |
CC(1/2) | 0.963 | 0.989 | 0.647 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294 | BTP, PEG 3350, NaAc |