5D5Q
HcgB from Methanocaldococcus jannaschii with the pyridinol derived from FeGP cofactor of [Fe]-hydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-02-07 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 64.910, 76.500, 65.100 |
Unit cell angles | 90.00, 106.77, 90.00 |
Refinement procedure
Resolution | 48.237 - 2.500 |
R-factor | 0.2075 |
Rwork | 0.206 |
R-free | 0.23200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wb0 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.128 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.600 | |
High resolution limit [Å] | 2.500 | 12.000 | 2.500 |
Rmerge | 0.048 | 0.022 | 0.338 |
Rmeas | 0.057 | 0.026 | 0.401 |
Total number of observations | 69158 | ||
Number of reflections | 20900 | 208 | 2331 |
<I/σ(I)> | 16.65 | 52.33 | 3.98 |
Completeness [%] | 98.3 | 96.7 | 99.7 |
Redundancy | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 281 | 0.1 M sodium cacodylate (pH 6.5), 20 % (w/v) PEG8000, 0.2 M magnesium acetate |