Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D4O

Structure of CPII, a nitrogen regulatory PII-like protein from Thiomonas intermedia K12, bound to ADP, AMP and bicarbonate.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2013-10-13
DetectorRIGAKU RAXIS HTC
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths51.440, 75.450, 80.020
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution54.900 - 1.800
R-factor0.2072
Rwork0.206
R-free0.23190
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5d4l
RMSD bond length0.010
RMSD bond angle1.100
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareBUSTER-TNT (2.10.0)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]1.840
High resolution limit [Å]1.8008.0301.800
Rmerge0.0500.0240.563
Rmeas0.0550.0270.618
Total number of observations191688
Number of reflections295903922037
<I/σ(I)>19.2450.922.74
Completeness [%]99.499.794.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.22980.15 M KBr, 30% (w/v) PEG MME 2000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon