5D4D
Crystal structure of Thermus thermophilus product complex for transcription initiation with NAD and CTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-23 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.98 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 185.000, 103.510, 296.300 |
Unit cell angles | 90.00, 98.27, 90.00 |
Refinement procedure
Resolution | 42.173 - 3.000 |
R-factor | 0.204 |
Rwork | 0.201 |
R-free | 0.25350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g7h |
RMSD bond length | 0.008 |
RMSD bond angle | 0.952 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Refinement software | PHENIX (1.8-1069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.050 |
High resolution limit [Å] | 3.000 | 8.130 | 3.000 |
Rmerge | 0.119 | 0.033 | 0.920 |
Rmeas | 0.132 | 0.038 | |
Rpim | 0.067 | 0.018 | 0.535 |
Total number of observations | 869839 | ||
Number of reflections | 219058 | ||
<I/σ(I)> | 7.2 | ||
Completeness [%] | 97.9 | 99.1 | 93.7 |
Redundancy | 4 | 4 | 3.7 |
CC(1/2) | 0.999 | 0.677 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.4 | 295 | 100 mM Tris-HCl, pH 8.4, 200 mM potassium chloride, 50 mM magnesium chloride, 9.5% PEG4000 |