Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5CV1

C. elegans PGL-1 Dimerization Domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2013-08-08
DetectorRAYONIX MX-300
Wavelength(s)0.97857
Spacegroup nameP 61 2 2
Unit cell lengths59.720, 59.720, 227.240
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.070 - 3.599
R-factor0.3011
Rwork0.299
R-free0.32110
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5cow
RMSD bond length0.003
RMSD bond angle0.625
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.07047.0703.726
High resolution limit [Å]3.59916.1003.599
Rmerge0.1070.0420.706
Rmeas0.1120.0440.730
Total number of observations61362
Number of reflections526459397
<I/σ(I)>19.7546.435.63
Completeness [%]99.993.7100
Redundancy19.219.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.92981.575-1.625 M Sodium Malonate pH 5.9, 50-100 mM GuCl, 1 mM TCEP, 0.02% Na azide

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon