5CTX
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2010-08-31 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 142.892, 55.655, 51.213 |
Unit cell angles | 90.00, 100.55, 90.00 |
Refinement procedure
Resolution | 45.010 - 1.600 |
R-factor | 0.1867 |
Rwork | 0.185 |
R-free | 0.21950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1kzn |
RMSD bond length | 0.019 |
RMSD bond angle | 2.047 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.7 W8RSSI) |
Phasing software | MOLREP (10.2.35) |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.010 | 45.010 | 1.660 |
High resolution limit [Å] | 1.600 | 3.450 | 1.600 |
Rmerge | 0.046 | 0.026 | 0.297 |
Total number of observations | 117786 | 12453 | 11092 |
Number of reflections | 51605 | ||
<I/σ(I)> | 10.4 | 37.6 | 2.3 |
Completeness [%] | 98.8 | 93.9 | 98.4 |
Redundancy | 2.27 | 2.38 | 2.19 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 296 | 40-43% MPD_P1K_P3350, 100 mM Mops/Na-Hepes, 100 mM Divalents |