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5CJV

Isobutyryl-CoA mutase fused with bound adenosylcobalamin, GDP, Mg (holo-IcmF/GDP), and substrate isovaleryl-coenzyme A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyCCD
Collection date2011-12-17
DetectorADSC QUANTUM 315
Wavelength(s)0.9795
Spacegroup nameH 3 2
Unit cell lengths317.560, 317.560, 343.520
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.906 - 3.450
R-factor0.1938
Rwork0.193
R-free0.21440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xc6
RMSD bond length0.003
RMSD bond angle0.595
Data reduction softwareXDS
Data scaling softwareXSCALE
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.0003.540
High resolution limit [Å]3.4503.450
Number of reflections86230
<I/σ(I)>102
Completeness [%]99.099.9
Redundancy3.83.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298precipitant: 700 mM potassium sodium tartrate, 200 mM ammonium acetate, 100 mM imidazole pH 7.7. 3% (v/v) ethylene glycol additive in drop solution only. protein in 100 mM NaCl, 50 mM HEPES pH 7.5, 1 mM GDP, 3 mM MgCl2, 0.3 mM adenosylcobalamin, mixed with precipitant 1 uL + 1 uL set up under red light, grown in the dark, soaked with 5 mM isovaleryl-coenzyme A for 30 s

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PDB entries from 2024-05-15

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