5CDF
Structure at 2.3 A of the alpha/beta monomer of the F-ATPase from Paracoccus denitrificans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 72.550, 102.920, 89.180 |
Unit cell angles | 90.00, 112.67, 90.00 |
Refinement procedure
Resolution | 33.550 - 2.300 |
R-factor | 0.2268 |
Rwork | 0.225 |
R-free | 0.25670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2jdi |
RMSD bond length | 0.007 |
RMSD bond angle | 1.065 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0123) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.550 | 33.550 | 2.370 |
High resolution limit [Å] | 2.300 | 9.480 | 2.300 |
Rmerge | 0.137 | 0.061 | 0.525 |
Rpim | 0.094 | 0.041 | 0.364 |
Total number of observations | 142669 | 2281 | 12408 |
Number of reflections | 48901 | ||
<I/σ(I)> | 5.5 | 13.5 | 1.9 |
Completeness [%] | 91.4 | 90.6 | 94.1 |
Redundancy | 2.9 | 3.2 | 2.8 |
CC(1/2) | 0.984 | 0.985 | 0.603 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7.8 | 298 | PEG 10,000, cadaverine, Tris pH 7.8, glycerol, ATP |