5C7P
Structure of Leishmania nucleoside diphostate kinase mutant P95S
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-08-05 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.458 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 113.191, 113.191, 95.243 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.155 - 3.144 |
R-factor | 0.2022 |
Rwork | 0.200 |
R-free | 0.25330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ngs |
RMSD bond length | 0.005 |
RMSD bond angle | 0.968 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP (11.1.03) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 3.260 |
High resolution limit [Å] | 3.144 | 6.780 | 3.144 |
Rmerge | 0.158 | 0.077 | 0.667 |
Total number of observations | 54462 | ||
Number of reflections | 12356 | ||
<I/σ(I)> | 5 | ||
Completeness [%] | 98.0 | 93.5 | 99.6 |
Redundancy | 4.4 | 4 | 4.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 1.4 mol.L-1 tri-sodium citrate pH 6.0 |