5BSC
Crystal structure of K66A mutant of human macrophage migration inhibitory factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-05 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.275, 67.771, 87.535 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.750 - 1.890 |
R-factor | 0.1994 |
Rwork | 0.198 |
R-free | 0.21820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3djh |
RMSD bond length | 0.019 |
RMSD bond angle | 1.681 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0107) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.920 |
High resolution limit [Å] | 1.890 | 5.130 | 1.890 |
Rmerge | 0.056 | 0.048 | 0.125 |
Rmeas | 0.065 | 0.056 | 0.145 |
Rpim | 0.032 | 0.029 | 0.072 |
Total number of observations | 122999 | ||
Number of reflections | 32569 | ||
<I/σ(I)> | 15.9 | ||
Completeness [%] | 99.5 | 96.6 | 99.6 |
Redundancy | 3.8 | 3.2 | 3.5 |
CC(1/2) | 0.985 | 0.972 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 2 M ammonium sulfate, 3% 2-propanol, 0.1 M Tris-HCl, pH 7.5 |