5BS9
Crystal structure of N109A mutant of human macrophage migration inhibitory factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2015-04-29 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.682, 67.820, 86.068 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.910 - 1.980 |
R-factor | 0.1592 |
Rwork | 0.158 |
R-free | 0.18510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3djh |
RMSD bond length | 0.019 |
RMSD bond angle | 1.809 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0107) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.010 |
High resolution limit [Å] | 1.980 | 5.370 | 1.980 |
Rmerge | 0.017 | 0.010 | 0.028 |
Rmeas | 0.020 | 0.013 | 0.034 |
Rpim | 0.010 | 0.007 | 0.019 |
Total number of observations | 93057 | ||
Number of reflections | 28104 | ||
<I/σ(I)> | 25.8 | ||
Completeness [%] | 99.4 | 96.3 | 99.6 |
Redundancy | 3.3 | 2.8 | 2.9 |
CC(1/2) | 0.999 | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 2 M ammonium sulfate, 3% 2-propanol, 0.1 M Tris-HCl, pH 7.5 |