5BPZ
Atomic-resolution structures of the APC/C subunits Apc4 and the Apc5 N-terminal domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-05-01 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.0081 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 40.972, 57.297, 63.616 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.000 - 2.180 |
R-factor | 0.2122 |
Rwork | 0.211 |
R-free | 0.22630 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | SHARP |
Refinement software | BUSTER |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.630 | 2.240 |
High resolution limit [Å] | 2.180 | 2.180 |
Rmerge | 0.055 | 0.663 |
Number of reflections | 8213 | |
<I/σ(I)> | 28.5 | 4.5 |
Completeness [%] | 99.8 | 99.1 |
Redundancy | 12.8 | 12.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | The protein was concentrated to 3.4 mg/mL. Plate-like crystals were grown in a buffer containing 40 mM sodium propionate, 20 mM sodium cacodylate, 40 mM Bis-Tris propane (pH 7.0) and 25% PEG1500. Larger crystals were obtained by seeding. |