5B5U
Crystal structure of truncated Pyrococcus furiosus L-asparaginase with peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2016-05-04 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 91.310, 91.310, 186.971 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 60.374 - 2.610 |
R-factor | 0.2048 |
Rwork | 0.203 |
R-free | 0.24190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ra9 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.168 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX (1.7.2_869) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.830 | 2.750 |
High resolution limit [Å] | 2.610 | 2.610 |
Rmerge | 0.102 | 0.450 |
Number of reflections | 13346 | |
<I/σ(I)> | 15.9 | 5.7 |
Completeness [%] | 90.9 | 88.8 |
Redundancy | 12.7 | 13.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.2 M Sodium citrate tribasic dihydrate, 0.1 M Sodium cacodylate 6, 30%(v/v) 2-Propanol |