5B1L
The mouse nucleosome structure containing H3t
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-03 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 98.968, 107.425, 167.332 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.833 - 2.350 |
R-factor | 0.1993 |
Rwork | 0.197 |
R-free | 0.24290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2cv5 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.261 |
Data scaling software | HKL-2000 (704y) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.430 |
High resolution limit [Å] | 2.350 | 5.060 | 2.350 |
Rmerge | 0.086 | 0.058 | 0.454 |
Rmeas | 0.094 | 0.063 | 0.493 |
Rpim | 0.036 | 0.025 | 0.190 |
Total number of observations | 496153 | ||
Number of reflections | 75240 | ||
<I/σ(I)> | 5.9 | ||
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 6.6 | 6.3 | 6.7 |
CC(1/2) | 0.998 | 0.897 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | potassium cacodylate, potassium chloride, manganese chloride |