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5AOM

Structure of the p53 cancer mutant Y220C with bound small molecule PhiKan883

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Spacegroup nameP 21 21 21
Unit cell lengths65.160, 71.270, 105.110
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.731 - 1.740
R-factor0.1696
Rwork0.169
R-free0.19120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2j1x
RMSD bond length0.007
RMSD bond angle1.026
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.7001.830
High resolution limit [Å]1.7401.740
Rmerge0.0700.350
Number of reflections49879
<I/σ(I)>14.94.7
Completeness [%]98.296.7
Redundancy5.65.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP294SITTING-DROP VAPOR DIFFUSION AT 21 DEGREE C. PROTEIN SOLUTION: 6 MG/ML PROTEIN IN 25 MM SODIUM PHOSPHATE, PH 7.2, 150 MM KCL, 5 MM DTT. RESERVOIR BUFFER: 100 MM HEPES, PH 7.2, 19% (W/V) POLYETHYLENE GLYCOL 4000, 5 MM DTT. SOAKING BUFFER: SATURATED SOLUTION OF COMPOUND IN 100 MM HEPES, PH 7.2, 10 MM SODIUM PHOSPHATE, PH 7.2, 19% (W/V) POLYETHYLENE GLYCOL 4000, 20 % (V/V) GLYCEROL, 150 MM KCL.

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PDB entries from 2024-05-22

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