4ZMT
Crystal structure of human P-cadherin (ss-X-dimer-long)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-10-27 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 85.210, 105.830, 90.210 |
Unit cell angles | 90.00, 96.80, 90.00 |
Refinement procedure
Resolution | 42.310 - 2.700 |
R-factor | 0.22933 |
Rwork | 0.228 |
R-free | 0.24941 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zmn |
RMSD bond length | 0.009 |
RMSD bond angle | 1.354 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.310 | 2.850 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.090 | 0.587 |
Number of reflections | 43436 | |
<I/σ(I)> | 10.2 | 2 |
Completeness [%] | 99.1 | 97.1 |
Redundancy | 3.4 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 20% PEG 3,550 200 mM MgCl2 |