4ZLU
Lipomyces starkeyi levoglucosan kinase bound to levoglucosan, ADP and magnesium.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-02-12 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97945 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 114.857, 114.857, 234.766 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.057 - 1.800 |
R-factor | 0.1892 |
Rwork | 0.188 |
R-free | 0.21790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4yh5 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.145 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.570 | 1.900 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.101 | 0.719 |
Number of reflections | 145247 | |
<I/σ(I)> | 9.1 | 2.2 |
Completeness [%] | 99.9 | 99.7 |
Redundancy | 3.9 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.8 | 298 | Equal volumes of reservoir buffer (19% PEG4000, 0.1 M sodium acetate, 0.1 M Tris pH 6.8) and LGK (7 mg/ml) in crystallization buffer (50 mM NaCl, 2 mM ADP, 4 mM MgCl2, 0.5 mM TCEP, 1 mM aluminum nitrate, 10 mM sodium fluoride, 20 mM Tris pH 7.5) were mixed and a resulting crystal was then soaked with 100 mM levoglucosan for 10 minutes. |