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4ZLU

Lipomyces starkeyi levoglucosan kinase bound to levoglucosan, ADP and magnesium.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2013-02-12
DetectorRAYONIX MX-300
Wavelength(s)0.97945
Spacegroup nameP 41 21 2
Unit cell lengths114.857, 114.857, 234.766
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.057 - 1.800
R-factor0.1892
Rwork0.188
R-free0.21790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4yh5
RMSD bond length0.008
RMSD bond angle1.145
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.5701.900
High resolution limit [Å]1.8001.800
Rmerge0.1010.719
Number of reflections145247
<I/σ(I)>9.12.2
Completeness [%]99.999.7
Redundancy3.94.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.8298Equal volumes of reservoir buffer (19% PEG4000, 0.1 M sodium acetate, 0.1 M Tris pH 6.8) and LGK (7 mg/ml) in crystallization buffer (50 mM NaCl, 2 mM ADP, 4 mM MgCl2, 0.5 mM TCEP, 1 mM aluminum nitrate, 10 mM sodium fluoride, 20 mM Tris pH 7.5) were mixed and a resulting crystal was then soaked with 100 mM levoglucosan for 10 minutes.

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PDB entries from 2024-05-15

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