4ZJP
Structure of an ABC-Transporter Solute Binding Protein (SBP_IPR025997) from Actinobacillus Succinogenes (Asuc_0197, TARGET EFI-511067) with bound beta-D-ribopyranose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2015-04-22 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.54056 |
Spacegroup name | P 1 |
Unit cell lengths | 36.261, 37.416, 48.165 |
Unit cell angles | 95.20, 101.03, 97.09 |
Refinement procedure
Resolution | 20.000 - 1.630 |
R-factor | 0.1436 |
Rwork | 0.141 |
R-free | 0.18490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dri |
RMSD bond length | 0.006 |
RMSD bond angle | 0.953 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | HKL-3000 |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 1.660 |
High resolution limit [Å] | 1.630 | 4.410 | 1.630 |
Rmerge | 0.046 | 0.042 | 0.165 |
Rmeas | 0.057 | 0.053 | 0.204 |
Rpim | 0.034 | 0.032 | 0.118 |
Total number of observations | 69277 | ||
Number of reflections | 26483 | ||
<I/σ(I)> | 30 | ||
Completeness [%] | 87.1 | 89.3 | 81.5 |
Redundancy | 2.6 | 2.5 | 2.6 |
CC(1/2) | 0.994 | 0.952 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Protein (40 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM D-ribose); Reservoir (22.7 %(w/v) PEG 3350, 0.1M BisTris pH 8.0); Cryoprotection (80% reservoir,20% ethylene glycol) |