4ZI4
YopH W354H Yersinia enterocolitica PTPase bond with Divanadate glycerol ester in the active site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 98 |
Detector technology | CCD |
Collection date | 2012-07-18 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.888, 60.512, 89.358 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.262 - 1.121 |
R-factor | 0.1418 |
Rwork | 0.141 |
R-free | 0.15940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ypt |
RMSD bond length | 0.008 |
RMSD bond angle | 1.291 |
Data reduction software | AUTOMAR |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.160 |
High resolution limit [Å] | 1.120 | 1.120 |
Rmerge | 0.064 | 0.723 |
Number of reflections | 109639 | |
<I/σ(I)> | 52.8 | 10.4 |
Completeness [%] | 99.4 | 99.2 |
Redundancy | 11.4 | 10.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | Peg 3350, HEPES |