4Z9K
Ricin A chain bound to camelid nanobody (VHH2)(F5)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-27 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.98 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 78.376, 107.085, 111.944 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.065 - 1.500 |
R-factor | 0.1786 |
Rwork | 0.178 |
R-free | 0.19540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.019 |
RMSD bond angle | 1.682 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.3) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 111.940 | 111.940 | 1.530 |
High resolution limit [Å] | 1.500 | 8.220 | 1.500 |
Rmerge | 0.083 | 0.046 | 1.497 |
Rpim | 0.035 | 0.021 | 0.624 |
Total number of observations | 480384 | 3120 | 23799 |
Number of reflections | 75050 | ||
<I/σ(I)> | 12 | 38.8 | 1.4 |
Completeness [%] | 99.6 | 99.8 | 99 |
Redundancy | 6.4 | 5.9 | 6.6 |
CC(1/2) | 0.998 | 0.996 | 0.535 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 295 | 100 mM Tris, 15% PEG 3000, 2 mM Zinc acetate, 10 mM sulfobetaine |