4Z5Z
The 2.5-angstrom crystal structure of Mg(2+)-bound PqqB from Pseudomonas Putida
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 108 |
Detector technology | CCD |
Collection date | 2014-02-22 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.979 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 86.150, 86.150, 106.959 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.894 - 2.540 |
R-factor | 0.19 |
Rwork | 0.188 |
R-free | 0.22380 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.699 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.1) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.580 |
High resolution limit [Å] | 2.540 | 6.870 | 2.540 |
Rmerge | 0.144 | 0.086 | 0.472 |
Rmeas | 0.156 | 0.092 | 0.522 |
Rpim | 0.057 | 0.033 | 0.217 |
Total number of observations | 84784 | ||
Number of reflections | 13539 | ||
<I/σ(I)> | 5.9 | ||
Completeness [%] | 97.3 | 93.8 | 97.1 |
Redundancy | 6.3 | 7 | 4.9 |
CC(1/2) | 0.986 | 0.687 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.7 | 298 | 11% PEG4000, 0.2M NaCl, 1mM MgCl2, 1mM Malic acid, 0.1M Bis-Tris Propane |