4YXY
Computationally designed left-handed alpha/alpha toroid with 9 repeats; two linked rings of 12 repeats each structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-09-11 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 102.787, 102.787, 93.930 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.951 - 3.203 |
R-factor | 0.3018 |
Rwork | 0.300 |
R-free | 0.34500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | computational design |
RMSD bond length | 0.002 |
RMSD bond angle | 0.500 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 3.310 |
High resolution limit [Å] | 3.200 | 6.870 | 3.200 |
Rmerge | 0.056 | 0.034 | 0.461 |
Rmeas | 0.058 | 0.035 | 0.477 |
Rpim | 0.015 | 0.009 | 0.123 |
Total number of observations | 240835 | ||
Number of reflections | 16236 | ||
<I/σ(I)> | 19.6 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 14.8 | 14.3 | 15.1 |
CC(1/2) | 1.000 | 0.993 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 298 | 100 mM Tris, 15% Ethanol |