4YX5
SpaO(SPOA1,2)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSLS BEAMLINE X29A |
| Synchrotron site | NSLS |
| Beamline | X29A |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2013-11-22 |
| Detector | ADSC QUANTUM 315r |
| Wavelength(s) | 1.075, 0.979 |
| Spacegroup name | P 41 21 2 |
| Unit cell lengths | 65.760, 65.760, 95.650 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 38.678 - 2.900 |
| R-factor | 0.2187 |
| Rwork | 0.212 |
| R-free | 0.27910 |
| Structure solution method | SAD |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.324 |
| Data scaling software | Aimless (0.2.7) |
| Phasing software | PHENIX |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 54.190 | 54.190 | 3.080 |
| High resolution limit [Å] | 2.900 | 8.700 | 2.900 |
| Rmerge | 0.166 | 0.109 | 1.447 |
| Rpim | 0.034 | 0.024 | 0.283 |
| Total number of observations | 122494 | 4571 | 20277 |
| Number of reflections | 4975 | ||
| <I/σ(I)> | 14.4 | 26.9 | 2.7 |
| Completeness [%] | 99.3 | 95.2 | 99.3 |
| Redundancy | 24.6 | 21.2 | 26.2 |
| CC(1/2) | 0.996 | 0.995 | 0.856 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 277 | SpaO(145-213) + SpaO (232-297) was concentrated to 12mg/mL and crystallized with 25% PEG400, 10% isopropanol, 100mM sodium citrate pH=5.6 at 277K. Microseeding was employed to enhance crystal uniformity and diffraction. Briefly, crystals to be seeded were harvested in precipitant solution and vortexed in a microfuge tube with a small stir bar for ~60 seconds. The slurry of microseeds was serially dilluted (5-10-fold steps) in precipitant solution and 5 selected microseed-precipitant mixtures were mixed with fresh protein as in a normal hanging drop experiment. Crystals were cryoprotected in mother liquor with the PEG400 concentration raised to 37.5%. |






