4YX5
SpaO(SPOA1,2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.075, 0.979 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 65.760, 65.760, 95.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.678 - 2.900 |
R-factor | 0.2187 |
Rwork | 0.212 |
R-free | 0.27910 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.324 |
Data scaling software | Aimless (0.2.7) |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.190 | 54.190 | 3.080 |
High resolution limit [Å] | 2.900 | 8.700 | 2.900 |
Rmerge | 0.166 | 0.109 | 1.447 |
Rpim | 0.034 | 0.024 | 0.283 |
Total number of observations | 122494 | 4571 | 20277 |
Number of reflections | 4975 | ||
<I/σ(I)> | 14.4 | 26.9 | 2.7 |
Completeness [%] | 99.3 | 95.2 | 99.3 |
Redundancy | 24.6 | 21.2 | 26.2 |
CC(1/2) | 0.996 | 0.995 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | SpaO(145-213) + SpaO (232-297) was concentrated to 12mg/mL and crystallized with 25% PEG400, 10% isopropanol, 100mM sodium citrate pH=5.6 at 277K. Microseeding was employed to enhance crystal uniformity and diffraction. Briefly, crystals to be seeded were harvested in precipitant solution and vortexed in a microfuge tube with a small stir bar for ~60 seconds. The slurry of microseeds was serially dilluted (5-10-fold steps) in precipitant solution and 5 selected microseed-precipitant mixtures were mixed with fresh protein as in a normal hanging drop experiment. Crystals were cryoprotected in mother liquor with the PEG400 concentration raised to 37.5%. |