4YWN
Crystal structure of NADH-FMN oxidoreductase from Mycobacterium avium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-18 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.978720 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 50.260, 50.260, 229.590 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.812 - 1.800 |
R-factor | 0.1806 |
Rwork | 0.179 |
R-free | 0.21530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3pft |
RMSD bond length | 0.006 |
RMSD bond angle | 0.993 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.850 | |
High resolution limit [Å] | 1.800 | 8.050 | 1.800 |
Rmerge | 0.072 | 0.050 | 0.472 |
Rmeas | 0.075 | 0.054 | 0.493 |
Total number of observations | 335089 | ||
Number of reflections | 28598 | 414 | 2041 |
<I/σ(I)> | 20.56 | 35.35 | 4.93 |
Completeness [%] | 99.9 | 95.6 | 99.9 |
Redundancy | 11.7 | 12 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 290 | 20 mg/mL MyavA.00250.a.A1.PS00591 against JCSG a3 (optimization: 22% PEG3350, 200 mM ammonium citrate dibasic), cryoprotectant: 20% ethylene glycol, tray 247348, puck wuf3-10 |